PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010937003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 747aa    MW: 79740.4 Da    PI: 5.9131
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010937003.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.4e-07313333526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++f++ G C++Gd C +aHg
  XP_010937003.1 313 PCPDFRK-GACRRGDMCEYAHG 333
                     8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.55E-1482170IPR020683Ankyrin repeat-containing domain
SMARTSM002480.3791121IPR002110Ankyrin repeat
PROSITE profilePS5029715.03591166IPR020683Ankyrin repeat-containing domain
PfamPF127961.0E-891158IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.4E-1593170IPR020683Ankyrin repeat-containing domain
CDDcd002043.01E-1293169No hitNo description
SMARTSM002480.11126158IPR002110Ankyrin repeat
PROSITE profilePS5008811.14126161IPR002110Ankyrin repeat
SMARTSM003564.0E-6308334IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-4312335IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-5313333IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582313335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4341371IPR000571Zinc finger, CCCH-type
SMARTSM0035676343366IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MCGGPERLKH SPSPSQSPSP FTAEQTNNSS PPVDMNHLTI ETDDNFSSLL ELAANNDADG  60
FQRSVDEDPS AVDEIGLWYG RKKGSNRMVL EPRTPLMVAA TYGSIEVLRL ILSLSSVDVN  120
RCCGPDKTTA LHCAASGGSA NAVDAVKLLL SAGADAGLVD ANGHRPADVI AVPPKLVEVK  180
LALEDLLGGP GGGSHQFLRL STSTSSFSSP PLSLSPEEDG SPSSDSSASP TAGKFHDHLP  240
PSAASEKKEY PVDPSLPDIK NSIYATDEFR MFSFKVRPCS RAYSHDWTEC PFVHPGENAR  300
RRDPRKYHYS CVPCPDFRKG ACRRGDMCEY AHGVFECWLH PAQYRTRLCK DGTSCTRRVC  360
XFAHTNDELR PLYVSTGSAV PSPRSSASAA MEMAAAMSLL PGSPSSVPVM SPTPFTPPMS  420
PSANGGGHSS LAWPQPNVPA LHLPGSNLQS SRLRTSLSAR DMPVDEYSVL PELETAQQQL  480
SDFCFSPSQA RLGSSLAGNR TVRSNTLAPS NLDDLFSAEI SSSPRYNSEQ GAVFSPTHKS  540
AVLNQFQQQQ SLLSPINTNS VFSPKAVDPQ QQLSGHPALL QASLGVSSPG RMSPRNMEPV  600
SPMSSRLAAL AQREKLQQQL RSLSSRDLSS NNGVPSMVGL PANSSWSNWA SPSGKVDWGV  660
NGAELGRYKR SASVELGSGG EEPDVSWVQS LVSPPESREE HETNTLASNG GGAASDGSNS  720
NNNQVDGSDH TVLGAWLEQM QLDQLVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937003.10.0PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 24-like
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLV4SCL20.0V4SCL2_9R
STRINGVIT_13s0064g00920.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain